Unfortunately everyone has been confused and you removed the pertinent info from the first posts. I have been trying to point out he does not have any starting issues, its a bad idle issue after startup, but have been contradicted on symantics of poor performance after startup and warm up idle issue.
Quote from his original post
First thing in the morning. glow,start [very quik], instant fireup on all 8. 1 sec later engine falls back to very low idle,starts bucking and smoking bad. And has NO pedal control left [dead] This goes on for 1 to 5 min depending on ambient temp. the colder the longer it takes.then engine comes suddenly back to life ,smooth running and pedal control is back. then truck starts and runs fine all day.
Another question....
Is this the same vehicle you wired up the high idle with 12V instead of ground? And you have the remote start on?
The stuff that was deleted was what was occurring in June 08 on a 95 truck and not germaine now to the 98 transplant, I was not trying to solve anything necessarily since everybody was going different directions I was trying to bring the diagnostic train of thought back on track mostly just trying to lay foundation of information of what is happening now. I asked if I had left anything out which in post 18/46 above he confirmed as a starting issue and then you interjected opionion on diagnostics from the 95s problem.
With total disregard to what happened in June 08, lets go at this with fresh perspective to cleanout the cobwebs.
Bison describe the issue, is it that you are not able to get the truck to start, or as Buddy was indicating that once it is actually started it is having difficulties until the engine warms up a little, those are 2 different scenarios.
That exactly sums it up to a T.No isuess what so ever but that one.
I got an IP i took apart,they are actually pretty simple mechanicly. And other than a electr gremlin in the FS,OS or stepper motor, the only thing I can think of would be a sticking advance part or the FS valve itself.If this condition (very low rough idle without the rattle and blue/black smoke) is limp mode? It should trow a code right? Yet it does not.
This is not the IP on the truck now is it???
In my very first post, when the engine was still in the 95 i mentioned that there was no trottle response asociated with the start up idle problem.
At that time i suspected the glow circuit.I put in new AC delco 60-g plugs,measured 12 volt on all leads.It made No diff. mind you the engine would fire up instantly in -30 with blockheater of course. Without operational glow system it would have never started.
Next I swapped the AAP for a known good one.Still no dif
fast forward.
Gremlin followed the truck
Glow controller performs good.all leads are verified good,(checked with DVM)the plugs where used for only a week(i considder them new) and a glow bypass switch to extend the glow time on the slowerheating 60-G in our cold winter climate is installed as well + a fuel gauge..At overhaul, i tested all the glowplugs on the batt for working before installing them again. 2 brandnew 1050 amp batts installed.Cranking is very fast
The engine actually starts on all 8 immiddiatly but falls back to the slow irregulair idle within a sec.Then it is barely making 400 rpm on the tach.At that point there is no pedal response.
I did not check for volt drop but the amp gauge drops from 14.5 volt to 13 volt when ever the wait to start light lits up. (normal as glows energize)
I dont know what to add.
Confirm the following summary is accurate, the situation is now; good cranking & glow system is correct, your truck starts fine but fails to idle properly in very cold weather, but once the engine warms up then it responds properly, in warm weather you do not have this issue is that correct?
(what temps are you calling warm ?) when in this cold weather situation until your engine warms up you have no throttle authority via APP
(and this is a cold weather anomaly only correct?).
You did the engine transplant and it works fine most days, I now think you have same IP on the engine as it had when it was installed in the 95
(what is the model # of that IP), you have not moved the IP from it's timed position that works fine once truck is warmed & running, when it starts then cuts back does the engine ever acheive normal idle
(when warm, for your truck what rpm is that), or does it come just below your normal idle then cut back to a sub idle until the engine warms up, if that what rpm does it cut back to?
When idling with no APP control do you have a lot of whitish heavy fuel smelling smoke from exhaust? With cold weather you are plugging in the block heater-is it still working ???, is your heating element in the filter manager working?
Buddy please step away from the keyboard

that is what I'm going to do for a while, I have some thoughts what it could be, but I want as much additional
(without my/our opinion biases) info Bison can provide, before offering any more suggestions just yet.
Bison I want to know exactly what YOU are seeing Bison, and correct all missed points as to what is occurring now disregarding what was said in or done since June 08, our ability to trouble shoot remotely is soley based on what you report, you are the eyes and ears here, describe as best you can any differences in rpm-temp-smoke-speed-sounds-etc between the warm weather and cold weather starting.