If you want to go with a 4L80E trans, your easiest swap will be a LLY out of a 2006 VAN as it already has a 4L80E trans with the DMAX engine and the correct TCM to talk to it. Or you could run a VAN TCM with a DMAX engine, but I don't know what calibration yopu would run as one doesn't exist for a stock 4L80E TCM to work with a LB7 or LLY ECM(06+ are CAN BUS whereas the 05- use J1850 for the data link to the OBD2 plug and then J1939 for the ECM to FICM and TCM). A stand-alone TCM would be your easiest way and then just get a manual trans calibration in the ECM. You will probably need some custom tuning to get it all ironed out since the ECM will now be blind to everything else in the vehicle. The 4L80E WILL be your weak link though, no ifs and or buts about it. If you run it in 1st through 3rd it will live a somewhat decent life if it is built to the hilt per say, but 4th gear is where things get dangerous with the 4L80E. I know MIKE L is working on some stuff to try and get one to hold up to a DMAX, but the last I talked with him nothing was definate yet.
I know that the NX MUSTANG and the BUICK GRAND NATIONAL are both running 4L85E's with some healthy DURAMAX's in front of em, but these are lightweight street cars and 4th gear is used gingerly in them. The ALLISON is only about 3/4" longer, but it is about 2 inches taller and about 3 inches deeper(about 5-6 inches total height difference between them). It is possible to run a driverside drop T-case with an ALLISON as well as there are a few NP205's out there behind the ALLISON.
Getting the engine to run is relatively easy in all actuality, just slightly time consuming to sort out the connectors. You won't need but about 1/2 of the wiring that is there to make it run, but it is worth the time to do it yourself when PPE gets $1200 to mod a harness for you. I can check my diagrams later on, but I believe there are about 2 constant feed 12V+ fused feeds and 4 or 5 keyed feeds that are fused(2 will be hooked up via a relay then fused, ECM main feed and the FICM) to make the DURAMAX/ALLISON combo run. Then you have 2 wires to hook up to low wattage bulbs for the check engine and wait to start and she is happy with no check engine lights. You WILL need EFILIVE, PPE, or a custom tuned ECM from one of the many vendors out there to bypass the theftlock if you want to minimize the wiring as much as possible. Then again a BCM only requires 2 grounds, 3 power wires, one wire to the OBD2 plug, one ire to the ECM for the theft command, and then a resistor hooked across the igniton switch sensor wires and it will run(bypassing the theftlock via programming is still a better option).
There is no need to transfer in a DMAX dash or cluster to make the swap work, I didn't and mine works just fine. You can also contact member pussow over at the place as he did a swap into his 87 using a 4L85E(he later switched to an ALLISON though for strength as the 4L85E couldn't cut it). He is also the one who sells the conversion CD on EBAY. This swap is a nice swap once you're done with it, but it won't be cheap as DURAMAX's are still fetching a premium even for running take-outs(normally ranging from $3500 to $5500 on EBAY).
I got my 01 donor for $6K and it drove itself onto the trailer. I did pay a bit much though as mine didn't have a radiator or intercooler on it(got a used IC for $250, but the radiator set me back about $350 for a new one from CARQUEST), but I ended up selling the truck for $1500 afterwards because it still had a useable cab and a clear title with good running gear under it still. And I recovered my costs on my trasfer case when I sold the one from the donor as it was electric shift and I needed a manual shift. So I basically spent $4500 for a running engine and trans with ALL of the harness's and needed modules which would have cost a small fortune to have bought from a junkyard. If I would have waited a little longer I'm sure I could have gotten one cheaper as I know they were bringing about $4K at auction for equivelant trucks, but I got impatient and wanted to get this thing done now not later. Of course though, everytiome I latch onto 8K pounds and throw it around like a ragdoll I am reminded of why I did this swap. And burnouts are fun too):h.