As you may or may not know, these trucks are very electrically dependant. They NEED good GROUNDS for all power sources or these type symptoms act up.
If you you havn't already, Remove every ground in engine compartment, wire brush and re-install. Also a few cab-fram ribbon straps under the turbo side.
Good time to clean /retorque batt terms.
Take every fuse / relay out of the fuse box, examine, wire brush/clean if coroded, and re-install. Just moving them around helps.
Not sure if you already did this, but that is step #1 on repairing/diagnosing random problems.
And of course, make sure PMD wires are connected well at the harnesses.
It would really help for you if you had a fuel pressure guage to watch while it bucks. If the pressure doesn't budge and is healthy as a new pump should be, you know the problem is another gremlin.
Its also very possible that the sock in your tank is clogging up, giving you these symptoms of starving for fuel.
Once again, a fuel pressure guage will tell you this too.
Real-time fuel pressure kind of splits the diagnostic flowchart in half.
With all those ol' bones you have kicking around, i'm sure you'd use it on more than just this truck.
Cleaning electrical dependancies is a MUST DO.
The better you do it, the better the result.