So your SES light is working? This may solve your issue.
13 is fuel shutoff solenoid, the cylinder sticking up from the top of the IP. make sure its plugged in. It can set the code just by not having it plugged in and cranking once. That could be the issue though if it is not working. verify by clearning codes and checking again making sure its plugged in.
Much the same with 29, your glo plugs are working, so it must have been you took out the GloPlug fuse and it caused the 29. No big deal.
The 62 could be your issue. Turbo sensor Low, but the 5V reference from PCM also feeds the crank sensor, which could cause the issue. With IGN ON, check the voltage to gournd on the harnesses at pin C of the crank sensor, and at pin C of the boost sensor on the intake manifold, should have 5V. If the 5V is there, then you might have left it unplugged when you cranked once and cause the code, so clearing and rechecking might get rid of the code.
96 is cylinder #3 balance fault, so maybe with old engine you had a balance fault, clear codes and see if it goes away. Since youre not getting fuel and it wont run I dont think this engine could have thrown that code.
98 is also a balance fault but for cylinder #8
clear codes, crank, and see what comes back. Make sure your sensors are all plugged in.