Sorry, I was thinking of a different design that I knew of a wacky issue on. No help to this one specifically.
You have the inline 6 with inline injection pump, right?
When diagnosing a bad injector, I always swap it with another cylinder that is operating good. Say #1 has the missfire. Swap #1 injector with #2 injector - if the problem is now in #2 and it fixed #1, you know it is the injector.
If you have not done this, try it. New injectors come messed up sometimes. Also if the problem stays in that cylinder, you know it is the cylinder not the injector.
So your compression test was good, and matched the other cylinders, did you do a leak down test at same Time?
Are your valves adjustable? Consider something in the valve train not opening a valve all the way.
Have you done the thermal gun test comparing cylinders to see the weak cylinder and if so what were the temps?
If you have engine I think you do (Brazilian thing has me scratching my head) Inline pumps differ from a rotorary design in that the pump itself can wear out one cylinder at a a different rate. The good thing is they are individually adjustable- the bad part is it HAS to be done on a test machine. Just a wiggle or tightening down the lock can move the volume a descent amount. Pricey for a rebuild or even just bench adjustment, but if the guy is good it will make it feel like a whole new engine. Obviously exhaust options before getting to that step.