The factory ffm is an ok unit. The FTB is to get 3/8 all the way to the ip which is a great idea.
If you get an aftermarket filter set up that has 3/8 in and out then same results so long as you are filtering to 10microns, have a water separator and way to heat the fuel for cold weather starts.
Or are you talking a pre lift pump filter? These are good Especially when you get rid of the tank sock and have a high dollar lift pump to protect. When doing all this, the multi point pressure readings are good so you know when to change the filters based on loss of pressure vs guessing by miles driven. 30 micron normal for this.
on the fuel line- sae30r9 for the rubber. The more metal line you use, the better. I have done a couple trucks with all rubber, it works but securing it is worse. Wont last as long. Then also the rubber flexes and steals away the pressure building from the pump. Some folks argue the extra work wears on the lift pump sooner- idk about that but makes some sense. Also remember, if your supply line is junk your return line will be also. Do them at the same time.
I can’t recommend which line to use- more folks here that have done rusty line replacement than me I am sure.
make sure you stay away from red metals as you do it. No copper, brass, etc.
And add in the fuel pressure gauge tapped at the ip. Even if no gauge for now- put in fittings and plug it off until the gauge shows up. I am using electric this time with one sensor at ip, one before the ffm (leroys ffm adapter works for that). Later when I do a wazoo lift pump and prefilter I will add another sensor before that filter.